GSEA on all genes. This analysis is done by day and cell type on list of genes ranked by padj decreasing. The data base use is genes set from Molecular Signatures DataBase (MSigDB) species :
How many pathways are significatives (padj<0.05)
| ECs | FAPs | sCs | M1 | M2 | Neutro | NumberPathwayEnrichedByDay | |
|---|---|---|---|---|---|---|---|
| D0 | 0 | 71 | 72 | NA | NA | NA | 108 |
| D2 | 0 | 78 | 384 | 5 | 11 | 3 | 398 |
| D4 | 115 | 4 | 325 | 4 | 18 | NA | 346 |
| D7 | 3 | 0 | 20 | NA | 0 | NA | 23 |
| NumberPathwayEnrichedByTypeCell | 115 | 105 | 495 | 9 | 29 | 3 |
All condition combined, there are 527 pathway enriched. In this representation only pathway with upper letter are enriched in at least one condition.
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| Numbers conditions enrichis | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
|---|---|---|---|---|---|---|---|---|
| Numbers pathways | 254 | 139 | 46 | 28 | 34 | 22 | 3 | 1 |